TopAccountantsAustralia

E-commerce Accountants

E-commerce accounting trips up generalists: payment-gateway clearing accounts, inventory and COGS, overseas marketplaces, and GST on low-value imports. The accountants below advertise e-commerce expertise across Shopify, Amazon and beyond. Compare verified reviews, or get matched in 60 seconds.

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Top-rated e-commerce accountants

Acctivate Business Accountants - Brisbane
Fortitude Valley, QLD
5.0(179)

Acctivate is a Brisbane-based accounting firm providing business accounting, tax planning, compliance, and advisory services to small and medium-sized enterprises. The firm is led by Chartered Accountants Elle Green and Simon Burke and serves businesses across professional services, construction, allied health, property, e-commerce, and other industries.

Business AccountingTax PlanningComplianceCash Flow Management
Air Accounting
Sydney, NSW
4.9(74)

Air Accounting is a modern accounting firm that provides financial services including bookkeeping, payroll, compliance, and advisory guidance to growing Australian businesses. They specialize in serving e-commerce and food and beverage sectors with technology-enabled accounting solutions.

BookkeepingPayroll processingBAS and tax complianceFinancial advisory
Perfect Accounting & Tax Services
Direk, SA
4.8(46)

Perfect Accounting & Finance is a chartered certified professional accounting firm offering tax, accounting, and financial advisory services to freelancers, contractors, e-commerce organisations and small-to-medium businesses across Australia.

Individual Tax ReturnStudent Tax ReturnBusiness TaxBookkeeping
Raft Private
Prahran, VIC
5.0(14)

RAFT Private is a boutique, full-service accounting advisory firm offering proactive accounting services to businesses and private clients. They provide tax advisory, consulting, financial reporting, compliance, and transaction support across various industries including trade, construction, eCommerce, and startups.

Tax compliance and business advisoryFinancial reporting and complianceSelf Managed Superannuation Funds (SMSF)Entity setup and structures
Bean Ninjas
Burleigh Heads, QLD
5.0(12)

Bean Ninjas is an accounting firm specializing in bookkeeping, accounting, tax, and virtual CFO services for eCommerce businesses. They work with 7 and 8-figure eCommerce entrepreneurs across platforms including Shopify, WooCommerce, Amazon FBA, and omni-channel operations.

BookkeepingAccountingTaxVirtual CFO
Forty Two Advisory Pty Ltd
Chadstone, VIC

42 Advisory is a CPA firm in Chadstone, Melbourne, providing fixed-fee accounting, tax, BAS, bookkeeping, and business advisory services for small businesses. Xero-certified and registered tax agents, serving e-commerce, SaaS, medical, and hospitality clients across Melbourne's south-east and Australia-wide.

Small Business AccountingTax ReturnsTax PlanningBAS & GST Lodgement

Showing small business accountants who advertise e-commerce accountant work, ranked by rating.

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E-commerce Accountants — FAQs

Why do online sellers need a specialist?

Because a Shopify payout is not revenue — it's revenue minus fees, refunds and holds, often days after the sale. Specialists reconcile channel-by-channel, track true product margins, and keep inventory accounting from silently corrupting your numbers.

Do I charge GST selling overseas?

Exports are generally GST-free, while Australian sales count toward your GST turnover — and marketplaces sometimes collect GST on your behalf. The right setup depends on your channels, which is a one-hour conversation with the right accountant.

What software stack do e-commerce accountants use?

Commonly Xero or QuickBooks connected through a channel integrator (A2X, Dext or similar) that turns marketplace settlements into clean journals. If an accountant proposes manual entry of your Amazon settlements, keep looking.